PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005863.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 735aa    MW: 81560 Da    PI: 5.04
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005863.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.8e-06499519526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C+ff++ G C+ Gd CkF+H+
  Aco005863.1 499 YCSFFLK-GRCQQGDLCKFSHD 519
                  5******.*************7 PP

2zf-CCCH19.32e-06553573525
                  --SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                  +C++f+  G C +Gd+CkF+H
  Aco005863.1 553 PCHNFSSKGMCIRGDKCKFSH 573
                  7******************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.418494521IPR000571Zinc finger, CCCH-type
SMARTSM003560.0054495520IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6495519IPR000571Zinc finger, CCCH-type
SMARTSM003560.0015523549IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.624523550IPR000571Zinc finger, CCCH-type
SMARTSM003560.36551575IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6552575IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544553576IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MANPLPTSDI HLQTLNPRMR SFVHGTRRRS HLDSASYRTL VRIFSHCLDF SLNPPRNPPE  60
DANPSSDPAS TLREAREISL AGKEPTFDRD ESSEGGRVEL KERESPQLDR TSDETMVLGE  120
DSLSGDGLMC KDEVLQSVEE CLQREDANMV EGLENGECVD NALLNDLISD FSGLIDARDD  180
VVCSVNGLES GEKRDGNFVV ACGETQKNVN DQVSSLVDQL KQQKDCTQND QCDLGFSLKA  240
QEVKHGESDA SKHELPSFAK PNQIISSSES QHCSEEEERI KCLNGETHNE TPEEIMQKEA  300
NSCLELVMDV SKLENFNQTQ ADQAVSLVDD EEIEEGEIPD DAQELDEDLY EVHEDEILSD  360
RDSEEDAGEI NGEEGELAVS FDDRSNEGRH LLGNDRFFML RSKGDETSVL KAHASCTAAE  420
QVALNLSGEN FEKVASENKG ASIIEQPLKV EKKRKRTLTD ERKAKKKKAK RIKRAQKERA  480
QGVRRLKLQP IVKPKVVKYC SFFLKGRCQQ GDLCKFSHDT TPLTKSKPCK HFACGNCLKG  540
EDCPFDHELS KYPCHNFSSK GMCIRGDKCK FSHKIPASEG LSLTSEVRKS DTPSTTEKLN  600
SGKQSSIQNI PAVPSVEPRT VASSTRSDQK HSVGSSIKST KAPTEIPKGI RFLSFGKGKL  660
ESCNKQQSNL VLERRGISEV GNEQKAVFRP FIKEDMKDNN FLCKPSVTPS SKSLPREVSE  720
ASKILEEFLF CGGS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1451456KKRKRT
2453467RKRTLTDERKAKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.24e-06zinc finger nuclease 2